RE: @intconfchemstr@social.edu.nl
excited to see the first ICCS 2025 paper online!
Egon Willighagen
@egonw@social.edu.nl
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This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
2d ago
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 31, 2026
@MsPhelps @OpenAlex @HLdeJonge each time with a major update, my metadata got corrupted again
there is a significant risk with using big numbers: loss of interest in details
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
the last speaker today is Hannah Bast talking about QLever, now showing how it compares to alternatives
#SWAT4HCLS
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
@wikipathways more on Vodorezova's FDPcrawleR can be found here: https://github.com/vodor001/FDPcrawleR
#SWAT4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
second speaker is Kristina Vodorezova about FDPcrawleR, working in the ERDERA project on rare diseases
I wonder what the results are for the @wikipathways FDP
#SWAT4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
after my Scholia demo (during the poster session), now listening to two talks before the final keynote of today.
First, Yael Tirlet is speaking about SPARQL modules, so that people can focus on what they want to query, rather than how.
Thinking about my talk and that of others, we need a higher level SPARQL "programming language" indeed.
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
I stepped out from the session bc of a cough from last week that doesn't want to go away, and because my batteries were running out and I have a demo to give later this afternoon
I am sitting in the biohackathon area, with a RDF4RiskAssessment poster from four people from the German BfR
@bfr, is Taras Guenther or one of the other authors also on the #fediverse
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
It actually turns out that many speakers do not have Wikidata pages #SWAT4HCLS
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
we're back from lunch (no signs, so not clear what I had), and now started the first session after lunch by Samaneh Jozashoori and Nirmal Raman Kannaiyan using KGs and LLMs on literature for the purpose of drug repurposing
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
the second talk in the session also shows that RDF in hospitals is there. Enough that people are now focusing on querying across databases, and no longer just aligning ontologies.
Also, it shows that writing efficient SPARQL queries is something that requires tweaking SPARQL queries. The order of instructions matter, but a SPARQL query does not have a clear linear direction
#SWAT4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
second session just started with the first talk by Sabine Österle and Jan Armida about sharing health/patient data in Switzerland, across 26 kantons and legislations and 4 national languages
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
third speaker is Pedro Paulo Favato Barcelos, of Health-RI about ontologies in patient history provenance
he quotes: "the opposite of an ontology is not a non-ontology, but a bad ontology" -- someone
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
second speaker is Ömer Durukan Kılıç from Maastricht University. He is talking about MIMIC-III, which I think is described here: https://doi.org/10.1016/j.ijmedinf.2026.106297
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
first speaker is Ronald Cornet (https://qlever.scholia.wiki/orcid/0000-0002-1704-5980) talking about the history of ontologies, reasoning, and more
"we have been talking about reasoning over patient data for more than 20 years, but we still have not solve it"
#swat4hcls
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 24, 2026
@Andrawaag@genomic.social is kicking off the #swat4hcls main symposium. yesterday was the tutorial day, but all the talks (including a short talk by me) will be today.
Plz ping me if you read this and are also at SWAT4HCLS!
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Mar 18, 2026
@NFDI4Chem congrats!
What are "your" highlights? Are there data sets that stand out because of their reuse, for example?
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Nov 28, 2025
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Oct 18, 2025
interesting to see that also Journal of Cheminformatics (still not on Bluesky or Mastodon?) articles are also showing up in podcasts :) The most recent related to IP concerns: https://doi.org/10.1186/s13321-025-00982-w
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Jun 29, 2025
reflecting on my @biocurator@genomic.social Advanced Career Award nomination: "Curation is an essential part of doing research" https://chem-bla-ics.linkedchemistry.info/2025/06/29/curation-is-an-essential-part-of-doing-research.html
replies to this post become blog comments.
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Nov 18, 2024
@Bibliothecaris I'm still staying tuned
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Jan 17, 2024
thesis PDF is available from https://doi.org/10.26481/dis.20240116aw
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Jan 16, 2024
@kdkeller yeah, a pretty late decision Andra took. But the story is nice: it show how impactful discussion on social media can be
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Jan 15, 2024
online via this live stream tomorrow at 16 CET at https://www.youtube.com/watch?v=PkurGEIOufA #wikipathways #wikidata #shex #textmining
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Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
Egon Willighagen
@egonw@social.edu.nl
This account is used for tooting conferences and about the Dutch academic system. Sometimes Dutch. Toots are personal and searchable. he/him
social.edu.nl
@egonw@social.edu.nl
·
Jan 08, 2024
Next week Andra Waagmeester (@Andrawaag@genomic.social) will defend his PhD thesis on January 16 on the "Biological Pathway Abstractions: From Two-Dimensional Drawings to Multidimensional Linked Data" (https://www.maastrichtuniversity.nl/events/phd-defence-andra-sachinder-waagmeester). In the morning there will be a mini symposium (see image). Register here today: https://forms.gle/oqMbsVhurBiEQeca7 ! #wikipathways #biology #rdf #wikidata
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